Package index
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simulate_redox_holobiont() - Simulate a holobiont redox dataset with spatio-temporal structure
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rri_pipeline_st() - Holobiont Redox Resilience Index (RRI) with Spatio-Temporal Dynamics
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redoxrri_example - Example workflow for RedoxRRI
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rri_recovery_metrics() - Quantify perturbation-recovery metrics from an RRI trajectory
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rri_metric_table() - Return the perturbation-recovery metric definition table
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plot_rri_recovery_landscape() - Plot a recovery landscape from RRI perturbation-recovery metrics
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plot_RRI_ternary() - Ternary Plot of Holobiont Redox Resilience Allocation
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theme_ems() - EMS plotting theme
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rri_latent_correlation() - Latent Recovery Correlation for RedoxRRI
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rri_compensation_index() - Cross-Domain Compensation Index
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rri_sensitivity() - Sensitivity Analysis for RedoxRRI