Quality-control figure

Always look at the QC figure before trusting numbers. The left panel shows the (flat-field corrected) photograph with the detected dish, the analysed agar disk, expected inoculation points and search radii, colony outlines, the bacterium and its halo; the right panel shows the pixel classification, with each separated colony filled in its own colour (same colours as the outlines on the left).

plot_qc(
  x,
  panels = c("overlay", "classes"),
  colony_cols = c("#1FB5E0", "#D6336C", "#3FA34D", "#7B5CD6", "#00897B", "#F48FB1",
    "#8D6E63", "#5C6BC0")
)

Arguments

x

A mycohalo_result (computed with keep_images = TRUE).

panels

Which panels to draw.

colony_cols

Colours for the colonies.

Value

Invisibly x.

Examples

sim <- simulate_plate(width = 300, height = 400, seed = 11)
res <- analyze_plate(sim$image, verbose = FALSE)
plot_qc(res)