Plot edge-to-centre melanization profiles

Plot edge-to-centre melanization profiles

plot_profiles(x, colour_by = "colony_id", facet_by = NULL)

Arguments

x

A mycohalo_result, or a profile data frame (e.g. out$profiles from analyze_plates()).

colour_by

Column used for colour (default colony_id).

facet_by

Optional column for facets (e.g. plate_id, treatment).

Value

A ggplot object (requires ggplot2).

Examples

sim <- simulate_plate(width = 300, height = 400, seed = 12, edge_lightening = 10)
res <- analyze_plate(sim$image, verbose = FALSE)
if (requireNamespace("ggplot2", quietly = TRUE)) plot_profiles(res)
#> Warning: Removed 1 row containing missing values or values outside the scale range
#> (`geom_ribbon()`).