Aligned score trajectories and recovery-descriptor availability — plot_rri_recovery

A two-panel display separating score dynamics from finite-output counts. A finite result is computational availability, not evidence of ecological validity, adequate precision or successful return to baseline.

Usage

plot_rri_recovery_diagnostics(
  res,
  id,
  rec,
  time_col = "time",
  group_cols = c("plot", "depth", "plant_id"),
  perturb_start = NULL,
  perturb_end = NULL,
  base_size = 9
)

Arguments

res, id: Pipeline scores and their observation identifiers.
rec: Recovery table with one row per trajectory in id.
time_col: Name of the numeric time column.
group_cols: Columns identifying trajectories in both id and rec.
perturb_start, perturb_end: Optional exact event endpoints.
base_size: Base font size in points.

Value

A patchwork object, or a named list of ggplots without patchwork. Export at approximately 8 by 4.6 inches.

Examples

id <- data.frame(plot = rep(c("P1", "P2"), each=3), time=rep(1:3,2))
res <- list(row_scores=data.frame(RRI=c(.6,.3,.5,.7,.4,.6)))
rec <- data.frame(plot=c("P1","P2"), k_recovery=c(.1,NA_real_))
plot_rri_recovery_diagnostics(res,id,rec,group_cols="plot")